IL_9WW5_032

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

9WW5|1|AA|A|943, 9WW5|1|AA|A|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_032 not in the Motif Atlas

Homologous match to IL_8GLP_035

Geometric discrepancy: 0.0551

The information below is about IL_8GLP_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09092.2

Basepair signature

cWW-cWW

Number of instances in this motif group

15

Unit IDs

9WW5|1|AA|A|723
9WW5|1|AA|C|724
*
9WW5|1|AA|G|942
9WW5|1|AA|A|943
9WW5|1|AA|A|944
9WW5|1|AA|U|945

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain AI

60S ribosomal protein L7