IL_9WW5_061

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UUU*A(PSU)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_061 not in the Motif Atlas

Homologous match to IL_9SUM_033

Geometric discrepancy: 0.0499

The information below is about IL_9SUM_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71625.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

81

Unit IDs

9WW5|1|AA|U|1671
9WW5|1|AA|U|1672
9WW5|1|AA|U|1673
*
9WW5|1|AA|A|1682
9WW5|1|AA|PSU|1683
9WW5|1|AA|A|1684

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AN

60S ribosomal protein L13

Chain AS

60S ribosomal protein L18

Chain AV

60S ribosomal protein L21

Chain Ac

Large ribosomal subunit protein uL15

Chain Ad

60S ribosomal protein L29