IL_9WW5_077

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

9WW5|1|AA|C|1935, 9WW5|1|AA|A|2041, 9WW5|1|AA|U|2044, 9WW5|1|AA|G|2045

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_077 not in the Motif Atlas

Homologous match to IL_8GLP_080

Geometric discrepancy: 0.0661

The information below is about IL_8GLP_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34501.4

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

9WW5|1|AA|G|1933
9WW5|1|AA|A|1934
9WW5|1|AA|C|1935
9WW5|1|AA|C|1936
9WW5|1|AA|C|1937
9WW5|1|AA|C|1938
9WW5|1|AA|A|1939
9WW5|1|AA|G|1940
9WW5|1|AA|A|1941
9WW5|1|AA|A|1942
9WW5|1|AA|A|1943
9WW5|1|AA|A|1944
*
9WW5|1|AA|U|2038
9WW5|1|AA|G|2039
9WW5|1|AA|A|2040
9WW5|1|AA|A|2041
9WW5|1|AA|A|2042
9WW5|1|AA|A|2043
9WW5|1|AA|U|2044
9WW5|1|AA|G|2045
9WW5|1|AA|G|2046
9WW5|1|AA|A|2047
9WW5|1|AA|U|2048
9WW5|1|AA|G|2049
9WW5|1|AA|G|2050
9WW5|1|AA|C|2051
9WW5|1|AA|G|2052
9WW5|1|AA|C|2053

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AE

Large ribosomal subunit protein uL3

Chain AL

Ribosomal protein uL16-like

Chain AQ

60S ribosomal protein L13a

Chain Ah

60S ribosomal protein L35a

Chain Ao

Ubiquitin-60S ribosomal protein L40