IL_9WW5_079

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

9WW5|1|AA|C|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_079 not in the Motif Atlas

Homologous match to IL_8GLP_083

Geometric discrepancy: 0.1434

The information below is about IL_8GLP_083

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9WW5|1|AA|C|2083
9WW5|1|AA|C|2084
9WW5|1|AA|G|2085
*
9WW5|1|AA|C|2272
9WW5|1|AA|G|2273

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain AI

60S ribosomal protein L7

Chain AS

60S ribosomal protein L18

Chain Ag

60S ribosomal protein L32