IL_9WW5_085

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_085 not in the Motif Atlas

Geometric match to IL_8GLP_089

Geometric discrepancy: 0.0723

The information below is about IL_8GLP_089

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.5

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

37

Unit IDs

9WW5|1|AA|G|2406
9WW5|1|AA|G|2407
9WW5|1|AA|U|2408
9WW5|1|AA|U|2409
*
9WW5|1|AA|A|2783
9WW5|1|AA|C|2784

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AZ

60S ribosomal protein L23a

Chain Ai

60S ribosomal protein L34

Chain Al

60S ribosomal protein L37

Chain An

60S ribosomal protein L39