IL_9WW5_097

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

AACAA(OMU)G*C(PSU)A(PSU)

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_097 not in the Motif Atlas

Homologous match to IL_9H3G_083

Geometric discrepancy: 0.0763

The information below is about IL_9H3G_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.4

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

9WW5|1|AA|A|2832
9WW5|1|AA|A|2833
9WW5|1|AA|C|2834
9WW5|1|AA|A|2835
9WW5|1|AA|A|2836
9WW5|1|AA|OMU|2837
9WW5|1|AA|G|2838
*
9WW5|1|AA|C|3850
9WW5|1|AA|PSU|3851
9WW5|1|AA|A|3852
9WW5|1|AA|PSU|3853

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain AR

60S ribosomal protein L17

Chain Af

60S ribosomal protein L31