IL_9WW5_098

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

AAG*CC(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_098 not in the Motif Atlas

Homologous match to IL_9SUM_069

Geometric discrepancy: 0.0756

The information below is about IL_9SUM_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10432.4

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

12

Unit IDs

9WW5|1|AA|A|2844
9WW5|1|AA|A|2845
9WW5|1|AA|G|2846
*
9WW5|1|AA|C|3842
9WW5|1|AA|C|3843
9WW5|1|AA|PSU|3844

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain AX

60S ribosomal protein L23

Chain AY

60S ribosomal protein L24