IL_9WW5_104

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GG*CGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_104 not in the Motif Atlas

Homologous match to IL_8GLP_110

Geometric discrepancy: 0.2244

The information below is about IL_8GLP_110

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18824.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9WW5|1|AA|G|2896
9WW5|1|AA|G|2897
*
9WW5|1|AA|C|3602
9WW5|1|AA|G|3603
9WW5|1|AA|A|3604
9WW5|1|AA|C|3605

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AT

60S ribosomal protein L19