IL_9WW5_120
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 9WW5|1|AA|G|4084, 9WW5|1|AA|G|4086, 9WW5|1|AA|G|4087, 9WW5|1|AA|C|4162, 9WW5|1|AA|U|4163
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9WW5_120 not in the Motif Atlas
- Homologous match to IL_8GLP_135
- Geometric discrepancy: 0.0794
- The information below is about IL_8GLP_135
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52092.4
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9WW5|1|AA|G|4082
9WW5|1|AA|U|4083
9WW5|1|AA|G|4084
9WW5|1|AA|A|4085
9WW5|1|AA|G|4086
9WW5|1|AA|G|4087
9WW5|1|AA|C|4088
*
9WW5|1|AA|G|4161
9WW5|1|AA|C|4162
9WW5|1|AA|U|4163
9WW5|1|AA|C|4164
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AD
- 60S ribosomal protein L8
- Chain AJ
- 60S ribosomal protein L7a
- Chain AZ
- 60S ribosomal protein L23a
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