Loop IL_9WW5

3D structure

PDB id: 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
Description: human 80S ribosome rotated state
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å

Loop

Sequence: GGGGGCGAGCCCCGAGGGGCUCUCGCUUCUGGCGCCAAG*CGAC
Length: 43 nucleotides
Bulged bases: 9WW5|1|AA|C|4100, 9WW5|1|AA|C|4101, 9WW5|1|AA|G|4104, 9WW5|1|AA|G|4108, 9WW5|1|AA|G|4109, 9WW5|1|AA|C|4110, 9WW5|1|AA|G|4115, 9WW5|1|AA|C|4116, 9WW5|1|AA|U|4117, 9WW5|1|AA|U|4118, 9WW5|1|AA|C|4119, 9WW5|1|AA|U|4120, 9WW5|1|AA|G|4121
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9WW5|1|AA|G|4091
9WW5|1|AA|G|4092
9WW5|1|AA|G|4093
9WW5|1|AA|G|4094
9WW5|1|AA|G|4095
9WW5|1|AA|C|4096
9WW5|1|AA|G|4097
9WW5|1|AA|A|4098
9WW5|1|AA|G|4099
9WW5|1|AA|C|4100
9WW5|1|AA|C|4101
9WW5|1|AA|C|4102
9WW5|1|AA|C|4103
9WW5|1|AA|G|4104
9WW5|1|AA|A|4105
9WW5|1|AA|G|4106
9WW5|1|AA|G|4107
9WW5|1|AA|G|4108
9WW5|1|AA|G|4109
9WW5|1|AA|C|4110
9WW5|1|AA|U|4111
9WW5|1|AA|C|4112
9WW5|1|AA|U|4113
9WW5|1|AA|C|4114
9WW5|1|AA|G|4115
9WW5|1|AA|C|4116
9WW5|1|AA|U|4117
9WW5|1|AA|U|4118
9WW5|1|AA|C|4119
9WW5|1|AA|U|4120
9WW5|1|AA|G|4121
9WW5|1|AA|G|4122
9WW5|1|AA|C|4123
9WW5|1|AA|G|4124
9WW5|1|AA|C|4125
9WW5|1|AA|C|4126
9WW5|1|AA|A|4127
9WW5|1|AA|A|4128
9WW5|1|AA|G|4129
*
9WW5|1|AA|C|4155
9WW5|1|AA|G|4156
9WW5|1|AA|A|4157
9WW5|1|AA|C|4158

Current chains

Chain AA: 28S rRNA (3773-MER)

Nearby chains

Chain AD: 60S ribosomal protein L8
Chain AJ: 60S ribosomal protein L7a
Chain Ab: 60S ribosomal protein L27
Chain Ae: 60S ribosomal protein L30
Chain Ai: 60S ribosomal protein L34
Chain Ar: 60S ribosomal protein L37a
Chain BD: 40S ribosomal protein S3a

IL_9WW5_121