IL_9WW5_126
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- U(PSU)GA*(PSU)ACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9WW5_126 not in the Motif Atlas
- Homologous match to IL_9AXU_094
- Geometric discrepancy: 0.0986
- The information below is about IL_9AXU_094
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
9WW5|1|AA|U|4295
9WW5|1|AA|PSU|4296
9WW5|1|AA|G|4297
9WW5|1|AA|A|4298
*
9WW5|1|AA|PSU|4312
9WW5|1|AA|A|4313
9WW5|1|AA|C|4314
9WW5|1|AA|A|4315
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AG
- Large ribosomal subunit protein uL18
- Chain AS
- 60S ribosomal protein L18
- Chain AV
- 60S ribosomal protein L21
- Chain Ad
- 60S ribosomal protein L29
- Chain Aq
- 60S ribosomal protein L36a
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