IL_9WW5_128

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGC(PSU)*GA(PSU)CC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_128 not in the Motif Atlas

Homologous match to IL_9SUM_096

Geometric discrepancy: 0.0725

The information below is about IL_9SUM_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10004.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9WW5|1|AA|G|4400
9WW5|1|AA|G|4401
9WW5|1|AA|C|4402
9WW5|1|AA|PSU|4403
*
9WW5|1|AA|G|4440
9WW5|1|AA|A|4441
9WW5|1|AA|PSU|4442
9WW5|1|AA|C|4443
9WW5|1|AA|C|4444

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain AL

Ribosomal protein uL16-like

Chain Ad

60S ribosomal protein L29