IL_9WW5_134

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

9WW5|1|AA|A|4518, 9WW5|1|AA|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_134 not in the Motif Atlas

Homologous match to IL_9SUM_102

Geometric discrepancy: 0.0675

The information below is about IL_9SUM_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.5

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

9WW5|1|AA|C|4458
9WW5|1|AA|U|4459
*
9WW5|1|AA|A|4517
9WW5|1|AA|A|4518
9WW5|1|AA|C|4519
9WW5|1|AA|G|4520

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain AQ

60S ribosomal protein L13a

Chain AX

60S ribosomal protein L23