IL_9WW5_137

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

9WW5|1|AA|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_137 not in the Motif Atlas

Homologous match to IL_8GLP_150

Geometric discrepancy: 0.0741

The information below is about IL_8GLP_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9WW5|1|AA|U|4468
9WW5|1|AA|U|4469
9WW5|1|AA|G|4470
*
9WW5|1|AA|C|4485
9WW5|1|AA|C|4486
9WW5|1|AA|A|4487
9WW5|1|AA|A|4488
9WW5|1|AA|G|4489

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AK

60S ribosomal protein L9

Chain AQ

60S ribosomal protein L13a

Chain Ao

Ubiquitin-60S ribosomal protein L40