IL_9WW5_139

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9WW5|1|AA|A|4548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_139 not in the Motif Atlas

Homologous match to IL_9SUM_107

Geometric discrepancy: 0.1048

The information below is about IL_9SUM_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9WW5|1|AA|C|4537
9WW5|1|AA|G|4538
*
9WW5|1|AA|C|4547
9WW5|1|AA|A|4548
9WW5|1|AA|G|4549

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AD

60S ribosomal protein L8

Chain AL

Ribosomal protein uL16-like