IL_9WW5_147

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

9WW5|1|AA|A|4656, 9WW5|1|AA|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_147 not in the Motif Atlas

Homologous match to IL_8GLP_163

Geometric discrepancy: 0.0577

The information below is about IL_8GLP_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.5

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

9WW5|1|AA|U|4641
9WW5|1|AA|U|4642
*
9WW5|1|AA|A|4655
9WW5|1|AA|A|4656
9WW5|1|AA|U|4657
9WW5|1|AA|G|4658

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AT

60S ribosomal protein L19

Chain Af

60S ribosomal protein L31