IL_9WW5_167
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- AUCUC*GAUCU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9WW5_167 not in the Motif Atlas
- Homologous match to IL_8QYX_168
- Geometric discrepancy: 0.0526
- The information below is about IL_8QYX_168
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.15
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 14
Unit IDs
9WW5|1|AB|A|32
9WW5|1|AB|U|33
9WW5|1|AB|C|34
9WW5|1|AB|U|35
9WW5|1|AB|C|36
*
9WW5|1|AB|G|41
9WW5|1|AB|A|42
9WW5|1|AB|U|43
9WW5|1|AB|C|44
9WW5|1|AB|U|45
Current chains
- Chain AB
- 5S rRNA (120-MER)
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AG
- Large ribosomal subunit protein uL18
- Chain AM
- 60S ribosomal protein L11
Coloring options: