IL_9WW5_173

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CAAA*UGA(OMC)G

Length

9 nucleotides

Bulged bases

9WW5|1|BA|A|516

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_173 not in the Motif Atlas

Geometric match to IL_8GLP_190

Geometric discrepancy: 0.1437

The information below is about IL_8GLP_190

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.5

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

50

Unit IDs

9WW5|1|BA|C|37
9WW5|1|BA|A|38
9WW5|1|BA|A|39
9WW5|1|BA|A|40
*
9WW5|1|BA|U|514
9WW5|1|BA|G|515
9WW5|1|BA|A|516
9WW5|1|BA|OMC|517
9WW5|1|BA|G|518

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BB

40S ribosomal protein S4, X isoform

Chain BX

40S ribosomal protein S9