IL_9WW5_179

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

9WW5|1|BA|G|113, 9WW5|1|BA|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_179 not in the Motif Atlas

Homologous match to IL_9H3G_163

Geometric discrepancy: 0.2452

The information below is about IL_9H3G_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

9WW5|1|BA|U|112
9WW5|1|BA|G|113
9WW5|1|BA|G|114
9WW5|1|BA|U|115
*
9WW5|1|BA|A|348
9WW5|1|BA|A|349

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BB

40S ribosomal protein S4, X isoform

Chain BH

40S ribosomal protein S8

Chain BJ

40S ribosomal protein S11