IL_9WW5_181

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GCUCCUCUCCCACUU*AUGCCGAC

Length

23 nucleotides

Bulged bases

9WW5|1|BA|C|131, 9WW5|1|BA|U|132, 9WW5|1|BA|C|133, 9WW5|1|BA|C|134, 9WW5|1|BA|U|135, 9WW5|1|BA|C|136, 9WW5|1|BA|U|137, 9WW5|1|BA|C|138, 9WW5|1|BA|C|139, 9WW5|1|BA|C|142

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW5|1|BA|G|130
9WW5|1|BA|C|131
9WW5|1|BA|U|132
9WW5|1|BA|C|133
9WW5|1|BA|C|134
9WW5|1|BA|U|135
9WW5|1|BA|C|136
9WW5|1|BA|U|137
9WW5|1|BA|C|138
9WW5|1|BA|C|139
9WW5|1|BA|C|140
9WW5|1|BA|A|141
9WW5|1|BA|C|142
9WW5|1|BA|U|143
9WW5|1|BA|U|144
*
9WW5|1|BA|A|175
9WW5|1|BA|U|176
9WW5|1|BA|G|177
9WW5|1|BA|C|178
9WW5|1|BA|C|179
9WW5|1|BA|G|180
9WW5|1|BA|A|181
9WW5|1|BA|C|182

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BW

40S ribosomal protein S6