IL_9WW5_184

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_184 not in the Motif Atlas

Geometric match to IL_4WF9_093

Geometric discrepancy: 0.2753

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.5

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9WW5|1|BA|C|188
9WW5|1|BA|U|189
9WW5|1|BA|G|190
9WW5|1|BA|A|191
9WW5|1|BA|C|192
*
9WW5|1|BA|G|207
9WW5|1|BA|G|208
9WW5|1|BA|A|209
9WW5|1|BA|U|210
9WW5|1|BA|G|211

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BH

40S ribosomal protein S8