IL_9WW5_201

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9WW5|1|BA|U|607

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_201 not in the Motif Atlas

Homologous match to IL_9H3G_186

Geometric discrepancy: 0.25

The information below is about IL_9H3G_186

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9WW5|1|BA|G|606
9WW5|1|BA|U|607
9WW5|1|BA|C|608
*
9WW5|1|BA|G|635
9WW5|1|BA|C|636

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BE

40S ribosomal protein S3

Chain BQ

40S ribosomal protein S23

Chain Bf

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein