IL_9WW5_213

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_213 not in the Motif Atlas

Geometric match to IL_8GLP_235

Geometric discrepancy: 0.0991

The information below is about IL_8GLP_235

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.5

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

37

Unit IDs

9WW5|1|BA|A|922
9WW5|1|BA|G|923
*
9WW5|1|BA|C|1019
9WW5|1|BA|A|1020
9WW5|1|BA|U|1021
9WW5|1|BA|U|1022

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BZ

40S ribosomal protein S13

Chain Bb

40S ribosomal protein S15a

Chain Be

40S ribosomal protein S27