IL_9WW5_216

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9WW5|1|BA|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_216 not in the Motif Atlas

Homologous match to IL_9PN5_185

Geometric discrepancy: 0.1835

The information below is about IL_9PN5_185

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9WW5|1|BA|C|931
9WW5|1|BA|G|932
9WW5|1|BA|G|933
9WW5|1|BA|G|934
9WW5|1|BA|G|935
*
9WW5|1|BA|C|1007
9WW5|1|BA|A|1008
9WW5|1|BA|A|1009
9WW5|1|BA|G|1010

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain Ae

60S ribosomal protein L30

Chain BD

40S ribosomal protein S3a

Chain BR

40S ribosomal protein S26

Chain BZ

40S ribosomal protein S13