IL_9WW5_218

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_218 not in the Motif Atlas

Geometric match to IL_7MLX_001

Geometric discrepancy: 0.1793

The information below is about IL_7MLX_001

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

9WW5|1|BA|G|949
9WW5|1|BA|C|950
*
9WW5|1|BA|G|975
9WW5|1|BA|G|976
9WW5|1|BA|C|977

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AD

60S ribosomal protein L8

Chain BD

40S ribosomal protein S3a

Chain Ba

Small ribosomal subunit protein uS11