IL_9WW5_225

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_225 not in the Motif Atlas

Homologous match to IL_9H3G_207

Geometric discrepancy: 0.5358

The information below is about IL_9H3G_207

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

9WW5|1|BA|G|1108
9WW5|1|BA|C|1109
9WW5|1|BA|G|1110
*
9WW5|1|BA|C|1123
9WW5|1|BA|C|1124

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BC

Small ribosomal subunit protein uS2

Chain BD

40S ribosomal protein S3a

Chain Be

40S ribosomal protein S27

Chain Bh

40S ribosomal protein S17