IL_9WW5_230

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_230 not in the Motif Atlas

Geometric match to IL_8OI5_012

Geometric discrepancy: 0.2038

The information below is about IL_8OI5_012

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

9WW5|1|BA|G|1229
9WW5|1|BA|C|1230
9WW5|1|BA|C|1231
*
9WW5|1|BA|G|1528
9WW5|1|BA|C|1529

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BL

40S ribosomal protein S16

Chain BM

40S ribosomal protein S18

Chain BN

Small ribosomal subunit protein eS19