IL_9WW5_235

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GACAGGA(OMU)UG*CUCGAUUC

Length

18 nucleotides

Bulged bases

9WW5|1|BA|G|1285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW5|1|BA|G|1281
9WW5|1|BA|A|1282
9WW5|1|BA|C|1283
9WW5|1|BA|A|1284
9WW5|1|BA|G|1285
9WW5|1|BA|G|1286
9WW5|1|BA|A|1287
9WW5|1|BA|OMU|1288
9WW5|1|BA|U|1289
9WW5|1|BA|G|1290
*
9WW5|1|BA|C|1309
9WW5|1|BA|U|1310
9WW5|1|BA|C|1311
9WW5|1|BA|G|1312
9WW5|1|BA|A|1313
9WW5|1|BA|U|1314
9WW5|1|BA|U|1315
9WW5|1|BA|C|1316

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BI

40S ribosomal protein S10

Chain BT

40S ribosomal protein S29

Chain BY

40S ribosomal protein S12

Chain Bg

Ubiquitin-40S ribosomal protein S27a