IL_9WW5_238

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

G(UY1)G*CC

Length

5 nucleotides

Bulged bases

9WW5|1|BA|UY1|1326

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_238 not in the Motif Atlas

Homologous match to IL_9PN5_203

Geometric discrepancy: 0.1863

The information below is about IL_9PN5_203

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9WW5|1|BA|G|1325
9WW5|1|BA|UY1|1326
9WW5|1|BA|G|1327
*
9WW5|1|BA|C|1502
9WW5|1|BA|C|1503

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BI

40S ribosomal protein S10

Chain BT

40S ribosomal protein S29

Chain Bg

Ubiquitin-40S ribosomal protein S27a