IL_9WW5_245

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

9WW5|1|BA|C|1433, 9WW5|1|BA|C|1434, 9WW5|1|BA|C|1435, 9WW5|1|BA|C|1436, 9WW5|1|BA|C|1437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_245 not in the Motif Atlas

Homologous match to IL_9PN5_214

Geometric discrepancy: 0.5522

The information below is about IL_9PN5_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

9WW5|1|BA|U|1408
9WW5|1|BA|A|1409
*
9WW5|1|BA|U|1432
9WW5|1|BA|C|1433
9WW5|1|BA|C|1434
9WW5|1|BA|C|1435
9WW5|1|BA|C|1436
9WW5|1|BA|C|1437
9WW5|1|BA|A|1438

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BL

40S ribosomal protein S16

Chain BO

40S ribosomal protein S20