IL_9WW5_249

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GCUCAGCGUGUGCCUACC*GUAACCCGUUGAACCC

Length

34 nucleotides

Bulged bases

9WW5|1|BA|A|1556, 9WW5|1|BA|A|1580, 9WW5|1|BA|C|1581, 9WW5|1|BA|U|1585, 9WW5|1|BA|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW5|1|BA|G|1541
9WW5|1|BA|C|1542
9WW5|1|BA|U|1543
9WW5|1|BA|C|1544
9WW5|1|BA|A|1545
9WW5|1|BA|G|1546
9WW5|1|BA|C|1547
9WW5|1|BA|G|1548
9WW5|1|BA|U|1549
9WW5|1|BA|G|1550
9WW5|1|BA|U|1551
9WW5|1|BA|G|1552
9WW5|1|BA|C|1553
9WW5|1|BA|C|1554
9WW5|1|BA|U|1555
9WW5|1|BA|A|1556
9WW5|1|BA|C|1557
9WW5|1|BA|C|1558
*
9WW5|1|BA|G|1577
9WW5|1|BA|U|1578
9WW5|1|BA|A|1579
9WW5|1|BA|A|1580
9WW5|1|BA|C|1581
9WW5|1|BA|C|1582
9WW5|1|BA|C|1583
9WW5|1|BA|G|1584
9WW5|1|BA|U|1585
9WW5|1|BA|U|1586
9WW5|1|BA|G|1587
9WW5|1|BA|A|1588
9WW5|1|BA|A|1589
9WW5|1|BA|C|1590
9WW5|1|BA|C|1591
9WW5|1|BA|C|1592

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BE

40S ribosomal protein S3

Chain BF

40S ribosomal protein S5

Chain BI

40S ribosomal protein S10

Chain BL

40S ribosomal protein S16

Chain BN

Small ribosomal subunit protein eS19

Chain BO

40S ribosomal protein S20

Chain BT

40S ribosomal protein S29

Chain Bd

40S ribosomal protein S25