IL_9WW5_257

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_257 not in the Motif Atlas

Homologous match to IL_9SUM_221

Geometric discrepancy: 0.0802

The information below is about IL_9SUM_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58355.5

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

50

Unit IDs

9WW5|1|BA|C|1717
9WW5|1|BA|G|1718
9WW5|1|BA|A|1719
9WW5|1|BA|U|1720
*
9WW5|1|BA|A|1813
9WW5|1|BA|G|1814
9WW5|1|BA|A|1815
9WW5|1|BA|G|1816

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Ap

60S ribosomal protein L41