IL_9WW5_259

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

AUG*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_259 not in the Motif Atlas

Geometric match to IL_9SUM_178

Geometric discrepancy: 0.2582

The information below is about IL_9SUM_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9WW5|1|BA|A|1724
9WW5|1|BA|U|1725
9WW5|1|BA|G|1726
*
9WW5|1|BA|U|1808
9WW5|1|BA|A|1809
9WW5|1|BA|U|1810

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AX

60S ribosomal protein L23

Chain BQ

40S ribosomal protein S23