IL_9XFK_007

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_007 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0533

The information below is about IL_8B0X_071

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9XFK|1|I|C|239
9XFK|1|I|C|240
9XFK|1|I|A|241
9XFK|1|I|G|242
9XFK|1|I|U|243
9XFK|1|I|A|244
9XFK|1|I|G|245
*
9XFK|1|I|C|253
9XFK|1|I|G|254
9XFK|1|I|A|255
9XFK|1|I|A|256
9XFK|1|I|C|257
9XFK|1|I|G|258

Current chains

Chain I

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain l

50S ribosomal protein L35