IL_9XFK_020

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_020 not in the Motif Atlas

Geometric match to IL_8B0X_084

Geometric discrepancy: 0.0885

The information below is about IL_8B0X_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9XFK|1|I|G|738
9XFK|1|I|A|739
9XFK|1|I|C|740
*
9XFK|1|I|G|757
9XFK|1|I|C|758

Current chains

Chain I

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L34