IL_9XFK_040

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_040 not in the Motif Atlas

Geometric match to IL_8B0X_103

Geometric discrepancy: 0.2217

The information below is about IL_8B0X_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

9XFK|1|I|G|1038
9XFK|1|I|A|1039
9XFK|1|I|A|1040
9XFK|1|I|G|1041
*
9XFK|1|I|C|1114
9XFK|1|I|G|1115
9XFK|1|I|G|1116
9XFK|1|I|C|1117

Current chains

Chain I

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL6

Chain U

Large ribosomal subunit protein uL16

Chain d

50S ribosomal protein L25