IL_9XFK_059

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_059 not in the Motif Atlas

Homologous match to IL_7A0S_059

Geometric discrepancy: 0.0897

The information below is about IL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.5

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

9XFK|1|I|G|1651
9XFK|1|I|A|1652
9XFK|1|I|G|1653
9XFK|1|I|A|1654
9XFK|1|I|A|1655
9XFK|1|I|C|1656
*
9XFK|1|I|G|2004
9XFK|1|I|A|2005
9XFK|1|I|C|2006

Current chains

Chain I

23S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL3

Chain V

Large ribosomal subunit protein bL17