IL_9XFK_066

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_066 not in the Motif Atlas

Geometric match to IL_8B0X_129

Geometric discrepancy: 0.1968

The information below is about IL_8B0X_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70744.1

Basepair signature

cWW-tSH-tHS-L-R-cWW

Number of instances in this motif group

2

Unit IDs

9XFK|1|I|U|1720
9XFK|1|I|G|1721
9XFK|1|I|A|1722
9XFK|1|I|G|1723
9XFK|1|I|G|1724
*
9XFK|1|I|U|1736
9XFK|1|I|G|1737
9XFK|1|I|G|1738
9XFK|1|I|A|1739
9XFK|1|I|G|1740

Current chains

Chain I

23S rRNA

Nearby chains