IL_9XFK_098

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_098 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1478

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9XFK|1|I|C|2652
9XFK|1|I|U|2653
9XFK|1|I|A|2654
9XFK|1|I|G|2655
9XFK|1|I|U|2656
9XFK|1|I|A|2657
9XFK|1|I|C|2658
*
9XFK|1|I|G|2663
9XFK|1|I|G|2664
9XFK|1|I|A|2665
9XFK|1|I|C|2666
9XFK|1|I|C|2667
9XFK|1|I|G|2668

Current chains

Chain I

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL6