IL_9XFL_042

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

9XFL|1|I|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFL_042 not in the Motif Atlas

Homologous match to IL_1MMS_004

Geometric discrepancy: 0.3867

The information below is about IL_1MMS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

9XFL|1|I|G|1087
9XFL|1|I|A|1088
9XFL|1|I|A|1089
9XFL|1|I|A|1090
9XFL|1|I|G|1091
*
9XFL|1|I|C|1100
9XFL|1|I|U|1101
9XFL|1|I|C|1102

Current chains

Chain I

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL6

Chain Q

50S ribosomal protein L11

Chain m

50S ribosomal protein L36