IL_9XFL_050

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFL_050 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.2447

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9XFL|1|I|C|1357
9XFL|1|I|G|1358
9XFL|1|I|A|1359
9XFL|1|I|G|1360
9XFL|1|I|G|1361
*
9XFL|1|I|C|1370
9XFL|1|I|G|1371
9XFL|1|I|U|1372
9XFL|1|I|A|1373
9XFL|1|I|G|1374

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL2

Chain f

50S ribosomal protein L28

Chain k

50S ribosomal protein L34