IL_9XFL_067

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9XFL|1|I|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFL_067 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.072

The information below is about IL_8B0X_128

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9XFL|1|I|U|1712
9XFL|1|I|A|1713
9XFL|1|I|U|1714
9XFL|1|I|G|1715
9XFL|1|I|U|1716
9XFL|1|I|A|1717
9XFL|1|I|G|1718
*
9XFL|1|I|U|1742
9XFL|1|I|G|1743
9XFL|1|I|A|1744
9XFL|1|I|A|1745
9XFL|1|I|A|1746

Current chains

Chain I

23S rRNA

Nearby chains