IL_9XFL_071

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9XFL|1|I|A|1801, 9XFL|1|I|C|1816, 9XFL|1|I|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFL_071 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1052

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9XFL|1|I|U|1798
9XFL|1|I|G|1799
9XFL|1|I|C|1800
9XFL|1|I|A|1801
9XFL|1|I|A|1802
9XFL|1|I|A|1803
9XFL|1|I|C|1804
*
9XFL|1|I|G|1813
9XFL|1|I|G|1814
9XFL|1|I|A|1815
9XFL|1|I|C|1816
9XFL|1|I|G|1817
9XFL|1|I|U|1818
9XFL|1|I|A|1819
9XFL|1|I|U|1820
9XFL|1|I|A|1821

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL2