IL_9XFL_102

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFL_102 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.074

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9XFL|1|I|C|2652
9XFL|1|I|U|2653
9XFL|1|I|A|2654
9XFL|1|I|G|2655
9XFL|1|I|U|2656
9XFL|1|I|A|2657
9XFL|1|I|C|2658
*
9XFL|1|I|G|2663
9XFL|1|I|G|2664
9XFL|1|I|A|2665
9XFL|1|I|C|2666
9XFL|1|I|C|2667
9XFL|1|I|G|2668

Current chains

Chain I

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL6