IL_9XTC_040

3D structure

PDB id

9XTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class C, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGGG*CUU

Length

7 nucleotides

Bulged bases

9XTC|1|A|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XTC_040 not in the Motif Atlas

Geometric match to IL_8AF0_002

Geometric discrepancy: 0.2206

The information below is about IL_8AF0_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

9XTC|1|A|G|925
9XTC|1|A|G|926
9XTC|1|A|G|927
9XTC|1|A|G|928
*
9XTC|1|A|C|1389
9XTC|1|A|U|1390
9XTC|1|A|U|1391

Current chains

Chain A

RNA (1176-MER)

Nearby chains