IL_9XTC_045

3D structure

PDB id

9XTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class C, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XTC_045 not in the Motif Atlas

Geometric match to IL_4K31_004

Geometric discrepancy: 0.1143

The information below is about IL_4K31_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

9XTC|1|A|G|1405
9XTC|1|A|U|1406
9XTC|1|A|C|1407
*
9XTC|1|A|G|1494
9XTC|1|A|U|1495
9XTC|1|A|C|1496

Current chains

Chain A

RNA (1176-MER)

Nearby chains