IL_9XTC_050

3D structure

PDB id

9XTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class C, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

9XTC|1|A|A|1441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XTC_050 not in the Motif Atlas

Geometric match to IL_9DFE_061

Geometric discrepancy: 0.3092

The information below is about IL_9DFE_061

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9XTC|1|A|U|1440
9XTC|1|A|A|1441
9XTC|1|A|G|1442
*
9XTC|1|A|C|1460
9XTC|1|A|G|1461

Current chains

Chain A

RNA (1176-MER)

Nearby chains

Chain T

30S ribosomal protein S20