IL_9XTD_025
3D structure
- PDB id
- 9XTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli delta lepA 30S ribosomal subunit class B, body domain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9XTD|1|A|A|532, 9XTD|1|A|U|534, 9XTD|1|A|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9XTD_025 not in the Motif Atlas
- Homologous match to IL_6CZR_133
- Geometric discrepancy: 0.3004
- The information below is about IL_6CZR_133
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9XTD|1|A|G|515
9XTD|1|A|PSU|516
9XTD|1|A|G|517
9XTD|1|A|C|518
9XTD|1|A|C|519
9XTD|1|A|A|520
9XTD|1|A|G|521
*
9XTD|1|A|C|528
9XTD|1|A|G|529
9XTD|1|A|G|530
9XTD|1|A|U|531
9XTD|1|A|A|532
9XTD|1|A|A|533
9XTD|1|A|U|534
9XTD|1|A|A|535
9XTD|1|A|C|536
Current chains
- Chain A
- RNA (1128-MER)
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
- Chain L
- Small ribosomal subunit protein uS12
Coloring options: