IL_9XTD_026

3D structure

PDB id

9XTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class B, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9XTD|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XTD_026 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1344

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9XTD|1|A|C|569
9XTD|1|A|G|570
9XTD|1|A|U|571
9XTD|1|A|A|572
9XTD|1|A|A|573
9XTD|1|A|A|574
9XTD|1|A|G|575
*
9XTD|1|A|C|880
9XTD|1|A|G|881

Current chains

Chain A

RNA (1128-MER)

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17