IL_9XTD_038
3D structure
- PDB id
- 9XTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli delta lepA 30S ribosomal subunit class B, body domain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9XTD_038 not in the Motif Atlas
- Homologous match to IL_6CZR_364
- Geometric discrepancy: 0.121
- The information below is about IL_6CZR_364
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9XTD|1|A|G|887
9XTD|1|A|G|888
9XTD|1|A|A|889
9XTD|1|A|G|890
9XTD|1|A|U|891
9XTD|1|A|A|892
9XTD|1|A|C|893
9XTD|1|A|G|894
*
9XTD|1|A|U|905
9XTD|1|A|A|906
9XTD|1|A|A|907
9XTD|1|A|A|908
9XTD|1|A|A|909
9XTD|1|A|C|910
Current chains
- Chain A
- RNA (1128-MER)
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12
Coloring options: